PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_7513DC3F9.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YC
Protein Properties Length: 273aa    MW: 30403.9 Da    PI: 5.1526
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_7513DC3F9.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC55.51.3e-172742496
                  NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96
                            rikki++adedv +i+  +Pvl+ska elf+ +l  r+++ + e+  +t+  s +++++ + d++dfl ++ 
  Traes_1BL_7513DC3F9.2  2 PRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYNITVEKGVKTVSSSHLKQCIHSYDVYDFLKNVS 74
                           69*******************************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008085.1E-16261IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.7E-22362IPR009072Histone-fold
SuperFamilySSF471137.81E-18876IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MPRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YNITVEKGVK TVSSSHLKQC  60
IHSYDVYDFL KNVSSKVPDL GPPDSSVDDK LGKRRKHGED ESEEESKRTR NEAACHTSNG  120
RGRGRGRGRG RRAGRGAERE IEHHELGCAQ FSKPGHLKVE IGDVVLDTSE TKEHTPLSNA  180
RASLRNIDLN LDLADYEEDT VAPQVQPSAP VVTVAPQVQT SGPSVSQLKE EVETKDFLGW  240
QMPEMNKMAM DPVQFALSSN HRLEEDEDYD NEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A4e-183611674Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120129RGRGRGRGRG
2120130RGRGRGRGRGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2505930.0AK250593.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf92h11, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568199.11e-140PREDICTED: dr1-associated corepressor-like
TrEMBLW5A3350.0W5A335_WHEAT; Uncharacterized protein
STRINGMLOC_72809.21e-152(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.13e-42nuclear factor Y, subunit C11
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]